PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 80aa    MW: 9159.3 Da    PI: 7.6834
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16392genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09954345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W++ E + + +a + +G g    W+++a+ mg ++++++++ ++q
         EMT16392  9 EWSKKENKMFEEALAYYGVGapnLWEKVASAMGGTKSAEEVRRHFQ 54
                     7********************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.015257IPR017877Myb-like domain
SMARTSM007174.1E-7659IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-12865IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-5962IPR009057Homeodomain-like
PfamPF002492.1E-8955IPR001005SANT/Myb domain
CDDcd001670.001551254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSSPSSDSEW SKKENKMFEE ALAYYGVGAP NLWEKVASAM GGTKSAEEVR RHFQFLVDDV  60
KNIEHGRIPF PKYKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-20277377RADIALIS
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612032e-84AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961187.19e-36PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN02e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLW5AJQ59e-55W5AJQ5_WHEAT; Uncharacterized protein
TrEMBLN1R1I89e-55N1R1I8_AEGTA; Uncharacterized protein
STRINGMLOC_53626.26e-45(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-22RAD-like 1